| Education | ||
| 2005-Current | PhD Candidate, EECS Dept.,Case Western Reserve University, Cleveland OH, USA | |
| 2003-2005 | MS, CS Dept., Bilkent University, Ankara, TURKEY | |
| 1999-2003 | BS, CS Dept., Bilkent University, Ankara, TURKEY | |
| Research | ||
| 2005-Current | Medical Informatics, Medical Simulations Advisor: Assoc. Prof. Dr. Cenk Cavusoglu in MeRCIS Lab | |
| 2003-2005 | Pathway Analysis Tool for Integration and Knowledge
Acquisitions, PATIKAweb Advisor: Assoc. Prof. Dr. Ugur Dogrusoz, in PATIKA |
| Journal Publications |
| "PATIKAweb: a Web interface for analyzing
biological pathways through advanced querying and visualization".
U. Dogrusoz, E.Z. Erson, E. Giral, E.
Demir, O. Babur, A. Cetintas, and R. Colak. Bioinformatics, 22(3), pp. 374-375, 2006 |
| Peer Reviewed Conference Publications |
| "A Software Framework for Multiscale and
Multilevel Physiological Model Integration and Simulation" E. Zeynep Erson, M. Cenk Cavusoglu. In Proceedings of the International Conference of the IEEE Engineering in Medicine and Biology Society(EMBC '08), Vancouver, British Columbia, Canada August 20-24, 2008. |
| "A Software Framework for Integrative
Physiological Model Simulation." E. Zeynep
Erson, M. Cenk Cavusoglu. In Proceedings of the International Conference on Software Engineering and Knowledge Engineering(SEKE '08), San Francisco, California, USA July 1-3, 2008. |
| "Ontology Based Design for Integrative
Simulation of Human Physiology." E.Z. Erson,
M.C. Cavusoglu. In Proceedings of the International Symposium on Health Informatics and Bioinformatics, Antalya, Turkey, April 30-May 2, 2007. |
| Oral Presentations |
| " PHY-SIM: Physiological Simulation,
Integration, Modeling Toolkit". E. Zeynep
Erson, M. Cenk Cavusoglu Engineering Principles in Biological Systems, Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference, October 14-16 2009 |
| Research Posters |
| " Design of an Ontology-Based Software
Framework for Integrative Simulation of Human Physiology". E. Zeynep Erson, M. Cenk Cavusoglu Research ShowCASE 2007, Case Western Reserve University, April 11- 12, 2007 Graduate Poster Award winner (First Prize) |
| " PATIKAweb: A Web service for querying,
visualizing and analyzing a graph-based pathway database". C. Aksay, F. Arik, E. Ataer, A. Ayaz, O. Babur, E.
Belviranli, A. Cetintas, R. Colak, G. Cozen, E. Demir, A. Dilek, U.
Dogrusoz, E.Z. Erson, E. Giral, E. Kaya, and H. Yildirim. ISMB 2005, Detroit, MI, USA, June 25-29, 2005 |
| Professional Activities |
| Committee member for "II. Turkish
Aspect-Oriented Software Development Workshop, TAOSD 2007". 29-09-2007, Bilkent University, Turkey. |
| CV | |
| in .pdf format | in .doc format |
| Contact |
| EECS Department, Case Western Reserve
University Cleveland, OHIO, 44106 USA Office: Glennan 210 Email: eze <{<[at}]>*> case dot edu |